emacs/org/config-org-agendas.el

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; helper for building agenda file lists
(defun my/load-org-agenda-files-recursively (dir) "Find all directories in DIR."
    (unless (file-directory-p dir) (error "Not a directory `%s'" dir))
    (unless (equal (directory-files dir nil org-agenda-file-regexp t) nil)
      (add-to-list 'org-agenda-files dir)
    )
    (dolist (file (directory-files dir nil nil t))
        (unless (member file '("." ".."))
            (let ((file (concat dir file "/")))
                (when (file-directory-p file)
                    (load-org-agenda-files-recursively file)
                )
            )
        )
    )
)

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; set org habit status for yesterday and schedule for today. this is to facilitate adding "skipped" log entries for better reporting and tracking of habits
; this assumes youre operating on daily habits
; https://emacs.stackexchange.com/questions/9433/how-to-make-org-prompt-for-a-timestamp-when-changing-state-of-a-todo/63809
; https://stackoverflow.com/questions/25437069/how-can-i-mark-org-habits-as-done-in-the-past
(defun my/org-habit-with-date (&optional arg)
  (interactive "P")
  (setq my-activation-time (current-time))
  (cl-letf* ((org-read-date-prefer-future nil)
             (org-popup-calendar-for-date-prompt nil)
             (my-current-time (org-read-date t t nil "when:" nil "-1d" nil))
             ((symbol-function 'current-time)
              #'(lambda () my-current-time))
             ((symbol-function 'org-today)
              #'(lambda () (time-to-days my-current-time)))
             ((symbol-function 'org-current-effective-time)
              #'(lambda () my-current-time))

             (super-org-entry-put (symbol-function 'org-entry-put))
             ((symbol-function 'org-entry-put)
              #'(lambda (pom property value)
                  (print property)
                  (if (lambda (or (equal property "LAST_REPEAT") (equal property "SCHEDULED")))
                      (let ((my-value (format-time-string (org-time-stamp-format t t) my-current-time)))
                        (funcall super-org-entry-put pom property my-value))
                    (funcall super-org-entry-put pom property value)
                    ))))
             (if (eq major-mode 'org-agenda-mode) (org-agenda-todo arg) (org-todo arg))
  )
  (if (eq major-mode 'org-agenda-mode) (org-agenda-schedule arg my-activation-time) (org-schedule arg my-activation-time) )
)

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; org-agenda tuning (view stuff only)
;; Remove completed deadline tasks from the agenda view
(setq org-agenda-skip-deadline-if-done t)
;; Remove completed scheduled tasks from the agenda view
(setq org-agenda-skip-scheduled-if-done t)
;; Remove completed items from search results
(setq org-agenda-skip-timestamp-if-done t)
;; Dont show deadline pre-warning if already scheduled (scheduled means the time when you /start work/ on a todo ; this is very different than norms
;;     see https://orgmode.org/manual/Deadlines-and-Scheduling.html
(setq org-agenda-skip-deadline-prewarning-if-scheduled t)
;; dont tend to care about tag inheritance outside of search
(setq org-agenda-use-tag-inheritance nil)
;; add new option to update habit for yesterday and reschedule it as active today
(add-hook 'org-agenda-mode-hook
          (lambda ()
                  (local-set-key (kbd "y") 'my/org-habit-with-date)))
(setq org-agenda-use-time-grid nil)
(setq org-agenda-window-setup "current-window")

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; Set some org agendas/dashboards
(setq org-agenda-sorting-strategy 
    '(
      (agenda habit-down scheduled-up deadline-up scheduled-up timestamp-up time-up priority-down category-keep)
      (todo habit-up time-down scheduled-down deadline-down todo-state-down priority-down alpha-up)
      (tags priority-down category-keep)
      (search category-keep)
     )
)

(setq org-agenda-file-regexp "\\`[^.].*\\.org\\'")
(setq org-agenda-files (list 
    "~/org/health/_health.org"
    "~/org/health/health_couples.org"
    "~/org/health/health_mike.org"
    "~/org/_index.org"
    "~/org/orgzly/_todo.org"
    "~/org/orgzly/_slipbox.org"
))


; use *all* org agenda files as refile targets
(setq org-refile-targets
      '((nil :maxlevel . 3)
        (org-agenda-files :maxlevel . 3)))

(require 'org-super-agenda)
(org-super-agenda-mode)

(setq org-super-agenda-groups
       '(
         (:name "Health"
          :and (:habit t
                :tag "health"))
         (:name "House"
           :and (:habit t
                 :tag "house"))
         (:name "Meds"
          :and (:habit t
                :tag "meds"))
         (:name "Health"
          :and (:tag "health" :tag "homework"))
         (:name "Misc"
          :tag "homework")
         (:name "Health"
          :and (:todo ("WIP" "READY")
                :tag "health"))
         (:order 200 :auto-parent "t")
         (:name "Slipbox"
          :and (:todo ("WIP" "READY")
                :tag "slipbox"))
         (:name "Personal"
          :and (:todo ("WIP" "READY")
                :tag "personal"))
         (:name "To Do"
          :todo ("WIP" "READY"))
         (:name "Slipbox" :tag "slipbox")
         (:name "Health" :tag "health")
         (:name "Personal" :tag "personal")
         (:name "To Do" :priority>= "C")
         (:name "Low Priority" :priority< "C")    
))

(setq org-agenda-custom-commands
      '(
          ("r" "Personal (Combined)"
              (
                  (agenda "" (
                      (org-agenda-overriding-header "Scheduled")
                      (org-agenda-remove-tags t)
                      (org-deadline-warning-days 14)
                      (org-agenda-entry-types '(:deadline :scheduled))
                  ))
                  (agenda "" (
                      (org-agenda-overriding-header "Habits")
                      (org-agenda-files (list "~/org/orgzly/_habits.org"
                                              "~/org/health/_meds.org"))
                      (org-agenda-remove-tags t)
                  ))
                  (tags-todo "+homework" (
                      (org-agenda-overriding-header "Homework")
                      (org-agenda-remove-tags t)
                  ))
                  (tags-todo "+TODO=\"WIP\"&-homework" (
                      (org-agenda-overriding-header "WIP")
                      (org-agenda-remove-tags t)
                  ))
                  (tags-todo "+TODO=\"READY\"&-homework" (
                      (org-agenda-overriding-header "Ready")
                      (org-agenda-remove-tags t)
                  ))
                  (tags-todo "-TODO=\"WIP\"&-TODO=\"READY\"&-homework" (
                      (org-agenda-overriding-header "")
                      (org-agenda-remove-tags t)
                  ))
               )
          )
          ("h" "Personal (Habits/Scheduled)"
              (
                  (agenda "" (
                      (org-agenda-overriding-header "Scheduled")
                      (org-agenda-remove-tags t)
                      (org-deadline-warning-days 14)
                      (org-agenda-entry-types '(:deadline :scheduled))
                  ))
                  (agenda "" (
                      (org-agenda-overriding-header "Habits")
                      (org-agenda-files (list "~/org/orgzly/_habits.org"
                                              "~/org/health/_meds.org"))
                      (org-agenda-remove-tags t)
                  ))
               )
          )
          ("t" "Personal (Tasks)"
              (
                  (tags-todo "+homework" (
                      (org-agenda-overriding-header "Homework")
                      (org-agenda-remove-tags t)
                  ))
                  (tags-todo "+TODO=\"WIP\"&-homework" (
                      (org-agenda-overriding-header "WIP")
                      (org-agenda-remove-tags t)
                  ))
                  (tags-todo "+TODO=\"READY\"&-homework" (
                      (org-agenda-overriding-header "Ready")
                      (org-agenda-remove-tags t)
                  ))
                  (tags-todo "-TODO=\"WIP\"&-TODO=\"READY\"&-homework" (
                      (org-agenda-overriding-header "")
                      (org-agenda-remove-tags t)
                  ))
               )
          )
          ("d" "Destiny"
              (
                  (agenda "" (
                      (org-agenda-start-on-weekday 2)
                      (org-agenda-overriding-header "Scheduled")
                      (org-agenda-files (list "~/org/games/games_destiny.org"))
                  ))
                  (alltodo "" (
                      (org-agenda-overriding-header "")
                      (org-agenda-files (list "~/org/games/games_destiny.org"))
                      (org-super-agenda-groups '(
                          (:name "WIP" :and (:todo "WIP" :not (:tag "crafting")))
                          (:name "READY" :and (:todo "READY" :not (:tag "crafting")))
                          (:name "Low Priority" :not (:tag "crafting"))
                          (:name "Patterns Needed" :not (:property ("resonance_needed" "0")))
                          (:name "Barrel" :not (:property ("barrel" "true")))
                          (:name "Magazine" :not (:property ("magazine" "true")))
                          (:name "Perk 1" :not (:property ("perk_1" "true")))
                          (:name "Perk 2" :not (:property ("perk_2" "true")))
                          (:name "Frame" :not (:property ("frame" "true")))
                          (:name "Weapon Leveling" :not (:property ("level_at_all_perks_or_higher" "true")))
                          (:name "Enhanced Perk 1" :not (:property ("enhanced_perk_1" "true")))
                          (:name "Enhanced Perk 2" :not (:property ("enhanced_perk_2" "true")))
                          (:name "Masterwork" :not (:property ("masterworked" "true")))
                      ))
                  ))
               )
           )
        )
)